I absolutely love sharing this Cream Cheese Zucchini Muffins Recipe with anyone who enjoys a cozy, comforting baked treat that still feels a little fresh and wholesome. What makes these muffins truly stand out is how the cream cheese filling adds this rich, creamy surprise right in the center, making each bite a delightful contrast of moist zucchini-infused crumb and smooth sweetness.

You’ll find that these muffins are perfect for an early morning breakfast, an afternoon snack with tea, or even a casual dessert. When I first tried this recipe, I was amazed by how the zucchini keeps the muffins tender without overwhelming the flavor, and pairing it with cream cheese just sends them over the top.

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Why You’ll Love This Recipe

  • Moist and Flavorful: The shredded zucchini adds moisture and subtle natural sweetness without any fuss.
  • Cream Cheese Swirl: The luscious filling inside every muffin makes it irresistibly creamy and special.
  • Easy to Make: Simple ingredients and straightforward steps ensure you won’t get stressed in the kitchen.
  • Perfect Texture: Baking with an initial high temperature gives you bakery-worthy, domed tops and tender centers.

Ingredients You’ll Need

These ingredients work harmoniously to bring the perfect balance of spice, sweetness, and moisture. Pro tip: when shopping, pick fresh zucchini that’s firm and vibrant for the best flavor and texture.

  • All-purpose flour: This is your base, and spooning it into the measuring cup rather than scooping will prevent dense muffins.
  • Baking powder and baking soda: Together, they help the muffins rise beautifully and keep the crumb tender.
  • Salt: Just a pinch to balance out the sweetness and enhance the flavors.
  • Ground cinnamon and nutmeg: Classic spices that give cozy warmth and depth to the muffins.
  • Canola or vegetable oil: Keeps the muffins moist — I prefer neutral oils so the flavors aren’t overpowered.
  • Brown sugar and granulated sugar: The brown sugar adds moisture and a hint of caramel flavor, while granulated sugar provides sweetness and texture.
  • Egg: Adds structure and richness; make sure it’s at room temperature to blend smoothly.
  • Pure vanilla extract: Enhances the overall flavor.
  • Shredded zucchini: No need to squeeze out the moisture — it keeps the muffins wonderfully tender.
  • Full-fat cream cheese: For that signature creamy filling; softened is key to avoid lumps.
  • Egg yolk (for filling): Helps create a smooth and custardy texture.
  • Granulated sugar (for filling): Sweetens the cream cheese layer just right.
  • Coarse sugar (optional topping): Adds a nice crunch and shimmering finish if you want a bakery-style touch.
Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love tinkering with this Cream Cheese Zucchini Muffins Recipe to suit different moods or dietary needs. Feel free to make it your own—you’ll enjoy experimenting with these little twists.

  • Gluten-Free Version: I swapped the all-purpose flour for a gluten-free blend once and was thrilled with how tender the muffins still turned out.
  • Flavor Play: Sometimes I add a handful of chopped walnuts or pecans for crunch and a touch of extra nuttiness.
  • Sweetener Swaps: Using maple syrup or honey instead of granulated sugar adds a lovely depth of flavor, just reduce the wet ingredients slightly.
  • Turn It Into a Loaf: If you want to make a zucchini cream cheese loaf instead, simply pour the batter into a greased loaf pan and adjust baking time accordingly.

How to Make Cream Cheese Zucchini Muffins Recipe

Step 1: Gather and Prep Your Ingredients

This step is all about getting organized. Preheat your oven to 425°F (218°C), and either spray a 12-count muffin tin or line with cupcake liners—your choice. I like to soften the cream cheese by leaving it on the counter for at least an hour before baking; it blends so much easier.

Step 2: Mix Your Dry Ingredients

Whisk together the all-purpose flour, baking powder, baking soda, salt, cinnamon, and nutmeg in a large bowl. This is your spice-and-leavening base that will make the muffins rise and taste cozy and fragrant.

Step 3: Whisk the Wet Ingredients

In a medium bowl, combine the oil, brown sugar, granulated sugar, egg, and vanilla. Whisk until smooth and glossy. This mix brings together the fats and sugars that make your muffins moist and tender.

Step 4: Add the Zucchini and Combine

Stir in the shredded zucchini into your wet ingredients. No need to drain it, just toss it in! Then, pour the wet mixture into the dry ingredients and stir gently until just combined. Be careful not to over-mix — a few lumps are totally fine and will keep your muffins light and fluffy.

Step 5: Prepare the Cream Cheese Filling

Using a mixer, beat the softened cream cheese until smooth. Add the egg yolk, vanilla extract, and granulated sugar, then mix until creamy and well combined. This filling is what makes each bite surprisingly indulgent.

Step 6: Assemble the Muffins

Spoon about 1 heaping tablespoon of zucchini batter into each muffin cup. Next, add 1 tablespoon of cream cheese filling on top, then cover with another heaping tablespoon of batter to fill the cups to the top. It’s okay if some cream cheese peeks out—that’s part of the charm! Sprinkle coarse sugar on top for a nice crunch if you like.

Step 7: Bake with the Temperature Trick

Bake the muffins at 425°F for 5 minutes—it helps them spring up tall with beautiful domed tops. Then, without opening the oven, lower the temperature to 350°F and continue baking for 15-17 minutes. Keep an eye out and test with a toothpick near the end: it should come out clean or with just a few moist crumbs.

Step 8: Cool and Enjoy

Let the muffins cool in the pan for at least 10 minutes. This resting time helps them set just right, making them easier to remove and enhancing the texture. Now, grab one and enjoy that soft crumb with the luscious cream cheese center!

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Pro Tips for Making Cream Cheese Zucchini Muffins Recipe

  • Don’t Overmix the Batter: A few lumps ensure tender muffins, so mix just until combined.
  • Room Temperature Ingredients: Using room temp eggs and cream cheese makes mixing smoother and prevents clumps.
  • The High Temp Start: That quick blast of heat creates bakery-style domed muffin tops—don’t skip this step!
  • Don’t Drain the Zucchini: Keeping the moisture locked in keeps muffins extra soft and delicious.

How to Serve Cream Cheese Zucchini Muffins Recipe

A white plate holds three muffins, two whole and one broken in half showing a moist, light brown inside with bits of green and white cream cheese swirled inside. The muffins have a rough, golden-brown top sprinkled with shiny sugar crystals. Around the plate, there are more whole muffins placed directly on a white marbled surface. A small green zucchini is visible near the bottom left, and a soft green cloth is partly seen on the right. A small cluster of tiny white flowers rests next to the plate, adding a gentle touch to the scene. Photo taken with an iphone --ar 4:5 --v 6.1

Garnishes

I love topping these muffins with just a sprinkle of coarse sugar before baking for that beautiful crunch, but fresh berries or a light dusting of powdered sugar also work nicely and add a bit of charm without overpowering the flavor.

Side Dishes

My go-to pairing is a hot cup of tea or coffee, but these muffins also shine alongside a bowl of fresh fruit or a savory salad for brunch. They’re versatile enough to balance sweet and savory components on your plate.

Creative Ways to Present

For special occasions, I’ve served these muffins on a tiered stand decorated with fresh mint leaves and edible flowers — it instantly makes your kitchen table look festive and inviting. Another fun idea is to cut them in half and fill with a dollop of whipped cream or a smear of homemade jam for an elegant touch.

Make Ahead and Storage

Storing Leftovers

I place leftover muffins in an airtight container at room temperature and they stay moist and tasty for up to 2 days. For longer freshness, I pop them in the fridge where they can last about a week, but I make sure they’re wrapped well to prevent drying out.

Freezing

Freezing these muffins works wonders, especially if you like to bake in batches. I freeze them individually wrapped in plastic wrap, then store in a freezer-safe bag for up to 3 months. Thaw overnight in the fridge and they thaw beautifully without losing texture.

Reheating

To bring back that fresh-baked warmth, I microwave a muffin for about 20 seconds or heat it in a toaster oven at 300°F for 5 minutes. It’s amazing how the cream cheese filling becomes soft and gooey again with just a little heat!

FAQs

  1. Can I use frozen zucchini for this recipe?

    Yes, you can use frozen zucchini, but be sure to thaw it completely and drain any excess water. Otherwise, the extra moisture might make your muffins soggy. I usually prefer fresh zucchini for the best texture and taste.

  2. Why do you bake the muffins at two different temperatures?

    The initial high heat jump-starts the muffins’ rise, creating those pretty tall domes that look bakery-perfect. Lowering the temperature allows the muffins to cook gently without drying out the centers, resulting in moist, evenly baked muffins.

  3. Can I make this recipe dairy-free?

    It’s a bit tricky because of the cream cheese filling, but you can try dairy-free cream cheese alternatives. The texture might differ slightly, but many plant-based cream cheeses whip up well and taste delicious. Just make sure the alternative is soft and spreadable.

  4. Do I really have to peel the zucchini?

    Nope! I never peel mine. The skin is thin and adds lovely color and nutrients. Plus, it softens perfectly during baking, so you won’t notice much texture difference.

  5. How long do these muffins keep fresh?

    Stored in an airtight container at room temperature, they’ll stay fresh for about 2 days. Refrigerated, they can last up to a week. For longer storage, freezing is your friend!

Final Thoughts

This Cream Cheese Zucchini Muffins Recipe has seriously become one of my go-to baking treasures. It’s the kind of recipe that makes mornings cozier and snack time more exciting, all while sneaking in some veggies in the most delicious way. I really hope you give it a try—and when you do, I’d love to hear how your kitchen smells and what your family thinks of these little delights!

Print
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Cream Cheese Zucchini Muffins Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.5 from 112 reviews
  • Author: Nora
  • Prep Time: 15 minutes
  • Cook Time: 22 minutes
  • Total Time: 55 minutes
  • Yield: 10 muffins
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American

Description

Deliciously moist and tender Cream Cheese Zucchini Muffins with a creamy cheesecake filling hidden inside. These bakery-style muffins feature warm spices like cinnamon and nutmeg, shredded zucchini for added moisture, and a unique two-temperature baking method to achieve perfectly high, fluffy tops. Great for breakfast or a sweet snack, they store well and can be frozen for later enjoyment.


Ingredients

Units Scale

Muffins

  • 1 and 1/2 cups (188g) all-purpose flour (spooned & leveled)
  • 1 teaspoon baking powder
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon salt
  • 2 teaspoons ground cinnamon
  • 1/4 teaspoon ground nutmeg
  • 1/2 cup (120ml) canola or vegetable oil
  • 1/4 cup (50g) packed light or dark brown sugar
  • 1/2 cup (100g) granulated sugar
  • 1 large egg, at room temperature
  • 1 teaspoon pure vanilla extract
  • 1 and 1/4 cups (150g) shredded zucchini (no need to blot)
  • Optional: coarse sugar for topping

Cheesecake Filling

  • 5 ounces (142g) full-fat brick cream cheese, softened to room temperature
  • 1 egg yolk, at room temperature
  • 1/2 teaspoon pure vanilla extract
  • 3 Tablespoons (36g) granulated sugar

Instructions

  1. Preheat and Prepare Muffin Pan: Preheat the oven to 425°F (218°C). Spray a 12-count muffin pan with nonstick spray or line with cupcake liners. This recipe makes about 10 muffins.
  2. Mix Dry Ingredients: In a large bowl, whisk together the all-purpose flour, baking powder, baking soda, salt, ground cinnamon, and ground nutmeg until well combined. Set aside.
  3. Mix Wet Ingredients: In a medium bowl, whisk together the canola or vegetable oil, brown sugar, granulated sugar, egg, and vanilla extract until smooth. Stir in the shredded zucchini until evenly distributed.
  4. Combine Batter: Pour the wet ingredients into the dry ingredients and stir or whisk gently until just combined. Avoid over-mixing to keep the muffins tender.
  5. Prepare Cream Cheese Filling: Using a handheld or stand mixer fitted with a paddle or whisk attachment, beat the softened cream cheese in a medium bowl on medium-high speed until smooth and creamy. Add the egg yolk, vanilla extract, and granulated sugar, then beat again until fully combined and smooth.
  6. Layer the Muffins: Spoon about 1 heaping tablespoon of zucchini batter into each muffin cup. Add approximately 1 tablespoon of cream cheese filling on top of the batter in each cup. Then top with another heaping tablespoon (or more) of muffin batter to fill the cups completely. Some cream cheese filling may peek out of the top or sides. Optionally, sprinkle coarse sugar on top for extra crunch.
  7. Bake at High Temperature: Place the muffin pan in the oven and bake at 425°F (218°C) for 5 minutes to give the muffins a strong rise and high tops.
  8. Reduce Temperature and Continue Baking: Without removing the muffins, reduce the oven temperature to 350°F (177°C) and continue baking for an additional 15 to 17 minutes, or until a toothpick inserted into the muffin (avoiding cream cheese filling) comes out clean.
  9. Cool and Serve: Allow the muffins to cool in the pan for at least 10 minutes before removing. Serve warm or at room temperature.
  10. Storage: Store leftover muffins tightly covered at room temperature for up to 2 days or refrigerate for up to 1 week. Muffins can also be frozen for up to 3 months; thaw overnight in the fridge and warm if desired.

Notes

  • Freezing Instructions: Freeze muffins tightly wrapped for up to 3 months. Thaw overnight in the refrigerator and warm in the microwave before serving if desired.
  • Special Tools: A 12-count muffin pan, muffin liners, glass mixing bowls, whisk, and electric mixer (handheld or stand) will make preparation easier.
  • Zucchini Prep: No need to peel zucchini before shredding unless preferred.
  • Recipe Variations: Consider doubling the recipe, turning it into a loaf, or adding other flavors to customize this base recipe.
  • Oven Temperature Trick: Starting the bake at a high temperature then reducing it creates bakery-style tall muffin tops and a tender crumb.

Nutrition

  • Serving Size: 1 muffin
  • Calories: 230
  • Sugar: 13g
  • Sodium: 180mg
  • Fat: 12g
  • Saturated Fat: 4g
  • Unsaturated Fat: 8g
  • Trans Fat: 0g
  • Carbohydrates: 28g
  • Fiber: 2g
  • Protein: 4g
  • Cholesterol: 50mg

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