I absolutely love how this Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe balances warm, cozy flavors with a kick of spice—it’s like fall and Italian comfort food had the best possible baby! The creamy pumpkin sauce combined with the fresh pesto and gooey cheeses makes every bite feel special, and adding that spicy Italian chicken sausage really kicks things up a notch without overpowering the dish.

This recipe works wonderfully for a weekend family dinner or even when you have friends coming over—you’ll find that it’s impressive but actually pretty straightforward to make. When I first tried this combination, I was blown away by how the pumpkin adds subtle sweetness and earthiness that pairs beautifully with the herby pesto, and the textures from the stuffed shells just make it so satisfying. Trust me, you’ll want to make this Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe your next cozy meal!

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Why You’ll Love This Recipe

  • Perfect Flavor Balance: The spicy sausage and creamy pumpkin sauce create an irresistible harmony of flavors.
  • Comfort Food with a Twist: Classic stuffed shells elevated with seasonal ingredients that feel fresh and fun.
  • Family Friendly: This recipe is loved by kids and adults alike, making it great for any dinner occasion.
  • Make Ahead Friendly: You can assemble it ahead of time, then just pop it in the oven when ready to serve.

Ingredients You’ll Need

Each ingredient plays an important role here—from the spicy Italian sausage that adds savory depth to the pumpkin puree bringing creamy texture and warmth. Look for quality fresh pesto and good cheeses for the best results.

  • Extra virgin olive oil: Use good quality for the best flavor and to keep the sausage from sticking.
  • Ground spicy Italian chicken sausage: Adds bold spice and richness without being too heavy like pork.
  • Red bell pepper: Gives a nice sweetness and crunch contrast once cooked down.
  • Pumpkin puree: Opt for plain canned pumpkin, not pumpkin pie filling, for pure flavor.
  • Vodka: This boosts the sauce’s depth and helps balance the flavors (and cooks off so no alcohol remains).
  • Whole milk: Adds creaminess to the pumpkin sauce, making it luscious.
  • Dried oregano: Gives herbaceous notes that play well with both sausage and pesto.
  • Crushed red pepper flakes: Provides a gentle spicy heat that complements the sausage perfectly.
  • Kosher salt and pepper: Essential for seasoning to taste and bringing out all the flavors.
  • Jumbo shells: These large pasta shells are perfect for filling with cheese and sauce.
  • Whole milk ricotta cheese: Creamy and mild, it’s the main cheese that holds the filling together.
  • Shredded fontina cheese: Meltable and nutty, fontina adds richness and gooey texture.
  • Basil pesto: Use homemade for fresh brightness or store-bought for convenience; either works beautifully.
  • Mozzarella cheese: Torn over the top for that classic melty Italian cheesiness.
  • Fresh basil: For garnish to brighten and add a pop of freshness when serving.
Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love that this Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe is super easy to tweak to suit your tastes or dietary needs. You can amp up the heat, make it vegetarian, or switch up the cheeses—it’s very forgiving and delicious no matter how you customize it.

  • Vegetarian Variation: I skipped the sausage once and added extra crushed red pepper flakes for a nice spicy punch that everyone still loved.
  • Cheese Swap: If you can’t find fontina, provolone or a mild gouda are great alternatives that melt well.
  • Make it Vegan: Try vegan ricotta and mozzarella, and omit the sausage or use plant-based sausage for a cruelty-free version.
  • Seasonal Twists: Add roasted butternut squash instead of pumpkin in fall for a slightly sweeter flavor.

How to Make Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe

Step 1: Create that Flavor-Packed Pumpkin Sauce

Start by heating the olive oil in a large pot over medium-high heat—when you see it shimmer, add the spicy Italian chicken sausage and brown it thoroughly, about 5 to 8 minutes. This step develops a lot of flavors, so take your time browning without rushing. Then, reduce the heat and add chopped red bell pepper, pumpkin puree, vodka, whole milk, oregano, crushed red pepper flakes, and season with salt and pepper. Let this simmer gently for around 15 minutes until it thickens slightly. You’ll know it’s perfect when it coats the back of a spoon and the aromas start filling your kitchen—this is one of my favorite moments!

Step 2: Cook the Jumbo Shells to Al Dente

While your sauce simmers, bring a large pot of salted water to a rolling boil and cook the jumbo shells according to the package directions, usually 10-12 minutes, until they’re al dente—not too soft because they’ll cook more in the oven. Drain the shells carefully and rinse with cool water to stop the cooking process and prevent sticking. This is an important step to keep them from becoming mushy later.

Step 3: Mix the Cheese and Pesto Filling

In a medium bowl, combine ricotta cheese, shredded fontina, and half of the basil pesto. This mixture should be creamy and full of fresh basil goodness—taste as you go and add a pinch of salt if needed. This filling will be stuffed into each pasta shell and is key to the dish’s rich, melty texture.

Step 4: Assemble Your Stuffed Shells

Take your prepared baking dish and spoon about three-quarters of the pumpkin sauce on the bottom to create a flavorful base. Then, one by one, fill each jumbo shell with roughly a tablespoon of the cheese mixture and nestle it into the sauce. Pour the remaining pumpkin sauce over the top of the shells, drizzle the rest of the pesto evenly across, and scatter torn mozzarella over everything. This layering ensures every bite delivers multiple layers of flavor and texture.

Step 5: Bake Until Bubbly and Golden

Pop the baking dish into a 350°F oven and bake uncovered for 20 to 25 minutes. You’ll want to keep an eye on it towards the end—the cheese should be melted, bubbly, and just starting to brown lightly. Let the shells cool for about 5 minutes before serving so the sauce sets a bit and you don’t burn your mouth. This wait is always the hardest part for me!

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Pro Tips for Making Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe

  • Brown Sausage Thoroughly: Browning the sausage well adds deep flavor and prevents a greasy texture in your sauce.
  • Don’t Overcook Pasta: Cooking shells just al dente keeps them from falling apart after baking.
  • Use High-Quality Pesto: Fresh or good-quality store-bought pesto really makes the flavor pop.
  • Cool Before Serving: Letting the dish rest before serving helps everything set perfectly and makes it easier to plate.

How to Serve Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe

The image shows a black cast iron pan filled with large yellow pasta shells stuffed with a creamy white cheese filling layered with green herbs. The shells rest on a thick layer of brown meat sauce with a reddish-orange tint and melted white cheese patches spread on top. There are small green herb leaves scattered over the pasta, adding a fresh look. The pan sits on a wooden surface, and a metal spoon is lifting one shell revealing the textured cheese inside. photo taken with an iphone --ar 4:5 --v 7

Garnishes

I always top mine with fresh basil leaves because they add that vibrant pop of color and a punch of herbal freshness that cuts through the richness. Sometimes a little grated Parmesan over the top is a nice touch, too.

Side Dishes

This dish pairs wonderfully with a simple arugula salad dressed with lemon vinaigrette to lighten things up, or some garlic roasted green beans for a bit of crunch. Crusty bread is an easy choice for sopping up any extra sauce, and my family loves having a glass of crisp white wine alongside for a special night in.

Creative Ways to Present

For holidays or dinner parties, I like to arrange the shells neatly on a platter, drizzle extra pesto artistically, and sprinkle toasted pumpkin seeds over the top for texture and visual appeal. Little ramekins for individual servings with a basil sprig are a lovely touch, too!

Make Ahead and Storage

Storing Leftovers

I store leftovers in an airtight container in the fridge and find they keep beautifully for up to 3 days. The flavors actually meld even more overnight, making the dish taste even better the next day.

Freezing

This recipe freezes really well—just assemble everything, bake or not, then freeze before baking or freeze the fully baked dish after cooling. When you’re ready, thaw overnight in the fridge and bake until bubbly. It’s a lifesaver for busy weeknights!

Reheating

I reheat leftover shells in the oven at 350°F covered with foil to prevent drying out, about 15-20 minutes, until warmed through and bubbly again. Microwaving works, but I find it’s less even and can sometimes dry out the cheesy filling.

FAQs

  1. Can I make the Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe vegetarian?

    Absolutely! You can omit the chicken sausage and add more crushed red pepper flakes to maintain the heat. You might also consider adding sautéed mushrooms or spinach to the pumpkin sauce for extra flavor and texture.

  2. Is it okay to use store-bought pesto for this recipe?

    Yes! High-quality store-bought pesto works just fine and makes this recipe quick to prepare. If you want to add a fresher touch, stir in a squeeze of lemon juice or extra fresh basil to brighten the flavor.

  3. Can I prepare the dish ahead of time?

    Definitely. You can assemble the stuffed shells and pumpkin sauce up until baking, then refrigerate covered for up to 24 hours. When ready, bake as directed; just add a few extra minutes if baking from chilled.

  4. What type of pumpkin puree should I use?

    Use plain canned pumpkin puree—not pumpkin pie filling, which has added sugar and spices. This keeps the savory balance perfect for this recipe.

  5. How spicy is this recipe?

    The dish has a moderate level of spice thanks to the spicy Italian sausage and crushed red pepper flakes. You can easily adjust the heat by choosing mild sausage or adding more pepper flakes to your taste.

Final Thoughts

This Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe quickly became one of my go-to comfort meals when I wanted something cozy yet exciting. It’s the kind of dish where every bite surprises you with rich layers of flavor, and the spicy-sweet combo always delights my family. I really think you’ll enjoy making it as much as eating it—give it a try and watch it become a staple in your dinner rotation too!

Print
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Spicy Pumpkin and Pesto Cheese Stuffed Shells Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 65 reviews
  • Author: Nora
  • Prep Time: 20 minutes
  • Cook Time: 40 minutes
  • Total Time: 1 hour
  • Yield: 8 servings
  • Category: Main Course
  • Method: Baking
  • Cuisine: Italian-American

Description

Deliciously comforting Spicy Pumpkin and Pesto Cheese Stuffed Shells combine savory Italian sausage, creamy pumpkin sauce, and a blend of cheeses for a hearty baked pasta dish that’s perfect for fall or any cozy dinner occasion.


Ingredients

For the Sauce and Filling

  • 2 tablespoons extra virgin olive oil
  • 1/2 pound ground spicy Italian chicken sausage
  • 1 red bell pepper, chopped
  • 1 cup pumpkin puree
  • 1/2 cup vodka
  • 1 cup whole milk
  • 2 teaspoons dried oregano
  • 1 pinch crushed red pepper flakes
  • Kosher salt and pepper, to taste

For the Pasta and Cheese Mixture

  • 1 pound jumbo pasta shells
  • 16 ounces (about 2 cups) whole milk ricotta cheese
  • 2 cups shredded fontina cheese
  • 3/4 cup basil pesto (homemade or store bought)
  • 8 ounces mozzarella, torn

For Serving

  • Fresh basil leaves


Instructions

  1. Preheat the Oven: Preheat your oven to 350°F (175°C). Lightly grease a 9×13 inch baking dish or one of similar size to prevent sticking.
  2. Prepare the Pumpkin Sauce: In a large pot over high heat, heat the olive oil until shimmering. Add the ground spicy Italian chicken sausage and brown it completely, about 5 to 8 minutes. Reduce the heat to low, then add the chopped red bell pepper, pumpkin puree, vodka, whole milk, dried oregano, crushed red pepper flakes, and a pinch each of kosher salt and black pepper. Let the sauce simmer gently for 15 minutes until it thickens slightly. Taste and adjust seasonings as desired.
  3. Cook the Pasta: While the sauce simmers, bring a large pot of salted water to a boil. Add the jumbo shells and cook according to package instructions until al dente. Drain the pasta and set aside to cool slightly.
  4. Make the Cheese Filling: In a medium bowl, combine the whole milk ricotta cheese, shredded fontina cheese, and 1/2 cup of the basil pesto. Mix well until creamy and evenly blended.
  5. Assemble the Dish: Spoon about three-quarters of the pumpkin sauce evenly across the bottom of your prepared baking dish. Working one pasta shell at a time, gently spoon about 1 tablespoon of the cheese mixture into each shell and place them into the baking dish over the sauce. Once all shells are filled and arranged, spoon the remaining pumpkin sauce over top the shells. Drizzle the remaining 1/4 cup of pesto evenly over the entire dish, then scatter the torn mozzarella cheese on top.
  6. Bake: Transfer the baking dish to the preheated oven and bake for 20 to 25 minutes, or until the cheese has melted thoroughly and is lightly golden on top. Remove from oven and allow to cool for 5 minutes.
  7. Serve: Garnish with fresh basil leaves and serve warm. Enjoy your comforting and flavorful Spicy Pumpkin and Pesto Cheese Stuffed Shells!

Notes

  • To make this dish vegetarian, simply omit the chicken sausage and add extra crushed red pepper flakes to maintain the heat.
  • You can prepare the dish ahead of time: assemble everything up to the final baking step, then cover and refrigerate. Bake when ready to serve.
  • Using fresh basil pesto enhances the flavor, but store-bought pesto works well in a pinch.
  • For a milder version, reduce or omit the crushed red pepper flakes.
  • Ensure the shells are well drained after boiling to prevent watery sauce.

Nutrition

  • Serving Size: 1 serving (approximately 1/8 of the recipe)
  • Calories: 480
  • Sugar: 5g
  • Sodium: 680mg
  • Fat: 26g
  • Saturated Fat: 12g
  • Unsaturated Fat: 12g
  • Trans Fat: 0g
  • Carbohydrates: 38g
  • Fiber: 4g
  • Protein: 25g
  • Cholesterol: 75mg

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